rs235652282 SNP Detail

Summary

• ID
  rs235652282
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5822379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCAAAGTG GACATGGGTG
  CTGGCCAGAG TCCTGCAGGA GCTTGAAGCT GGGAATGATG TTTGAGTCAC TGAGCTGAGC
  TGGCAGTTGG AACATGGCAA AGCCAGGAAT AAACCTTTTC TTCCAGAATG TCTCTCAGCA
  CCCTCTGTTG GCCCACAACC TCCTATAACT CCAGTTTTAG GAGCGCCAAT ACCCTGTGAT
  R
  GTTTGTATAT GGTTGGCCCA GTGTACTCCT ATTAAGAAAA TACCTCTGTG ATGGTTTGTA
  TATCCTTGGA CCAGGGAGTG GCACAATCTG GAGGTGTGAC CTAATGGGTG TGTCATTGTA
  GGTGTGGGTA TAAGATCCTC ACCCTAGTTG CTTGGAAGTC AGTCTTCCAC TAGCAGCCTT
  TGGATGAAGA CATAGAAATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325717453	CHEV_19_5772351	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235652282					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5822379 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10479	CpG island 10479	779 bp distal
Gm59602	predicted gene, 59602	within coordinates
Gm59603	predicted gene, 59603	within coordinates
Rr363624	regulatory region 363624	378 bp distal
Rr405811	regulatory region 405811	785 bp downstream
Scyl1	SCY1-like 1 (S. cerevisiae)	918 bp upstream
Tssr157640	transcription start site region 157640	1050 bp upstream
Tssr157641	transcription start site region 157641	980 bp upstream
Tssr157642	transcription start site region 157642	943 bp upstream
Tssr157643	transcription start site region 157643	928 bp upstream
Tssr157644	transcription start site region 157644	711 bp upstream