rs235660858 SNP Detail

Summary

• ID
  rs235660858
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13839601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATTTCAA TGACTCATTT
  ACCTGCATAT AGTCACAATA TCCTACTTTC TTTAGCCTTT TAAAATGTGG TTAAGTTTTC
  AACTAATATT CACTTCACCA AAGCAAAGCT GCCTGCTACT CTCTCTGTTT GCTCAATTTC
  TGAGTGCTTG GGCAGCTGCT CTGTTGTGTT TGCTGAAAAG AAATTGGATT CTTAAAGAAA
  M
  GGAGTAATCT TCTCTATTAA GCAATTAAAT AAAACGGACT TTTAGCGTGT GGACATGAAA
  GTGGGAGAAA GAGGGAGAGT GTGGGGGTGG AACTTTTTAA AAATCACATT TGGATTTTAA
  AAGATGTAAC TTAAAATGAT GCTTGGTAGA TTTTTTTTTT CTATTAAGGC TTTCTAGTTT
  AAGGCAACGG GCAGCTGAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379498340	MGP_WTSI_10_13683663	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235660858					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379498340	MGP_WTSI_10_13683663	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13839601 () rs orientation: forward

Symbol	Name	Function Class
2900084C01Rik	RIKEN cDNA 2900084C01 gene	1917 bp upstream
Cpgi1318	CpG island 1318	686 bp proximal
Gm56954	predicted gene, 56954	211 bp downstream
Gm66890	predicted gene, 66890	763 bp upstream
Rr384171	regulatory region 384171	207 bp upstream
Rr427854	regulatory region 427854	273 bp proximal
Rr427855	regulatory region 427855	774 bp proximal
Rr427856	regulatory region 427856	1875 bp proximal
Tssr92402	transcription start site region 92402	769 bp upstream
Tssr92403	transcription start site region 92403	939 bp upstream
Tssr92404	transcription start site region 92404	970 bp upstream
Tssr92405	transcription start site region 92405	992 bp upstream
Tssr92406	transcription start site region 92406	1157 bp upstream
Tssr92407	transcription start site region 92407	1382 bp upstream
Tssr92408	transcription start site region 92408	1401 bp upstream
Tssr92409	transcription start site region 92409	1433 bp upstream
Tssr92410	transcription start site region 92410	1471 bp upstream
Tssr92411	transcription start site region 92411	1922 bp upstream
Tssr92412	transcription start site region 92412	1994 bp upstream
Tssr96784	transcription start site region 96784	1787 bp downstream
Tssr96785	transcription start site region 96785	1805 bp downstream