rs235665185 SNP Detail

Summary

• ID
  rs235665185
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16348376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTCGCGGGC TCCGGGCCCC GCGGTCCCCG CCTTTCCCCC
  CACCCTTGGA TCCCGCAGCG GGGCGGCGCC CGGCGCCTCG CCCGTCCCCA CATTCCCCTC
  Y
  GCCAGCTACG AGACACTTAC CAGTCTCGGG GGCGCACTCA GCGCGGCCCC GGCCTCCGCG
  ATCCCAGCCG CAGCGACGGC GGGCCCGGCG CCATGTTCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322111622	CHEV_7_17199800	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235665185					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16348376 () rs orientation: forward

Symbol	Name	Function Class
Arhgap35	Rho GTPase activating protein 35	within coordinates
Cpgi18383	CpG island 18383	within coordinates
Gm29443	predicted gene 29443	within coordinates
Gm44589	predicted gene 44589	1900 bp upstream
Rr400125	regulatory region 400125	924 bp upstream
Rr642706	regulatory region 642706	617 bp distal
Rr642707	regulatory region 642707	within coordinates
Rr642708	regulatory region 642708	532 bp proximal
Rr642709	regulatory region 642709	637 bp proximal
Tssr64615	transcription start site region 64615	1156 bp upstream
Tssr70753	transcription start site region 70753	97 bp downstream
Tssr70754	transcription start site region 70754	162 bp downstream
Tssr70755	transcription start site region 70755	219 bp downstream
Tssr70756	transcription start site region 70756	327 bp downstream
Tssr70757	transcription start site region 70757	341 bp downstream
Tssr70758	transcription start site region 70758	398 bp downstream
Tssr70759	transcription start site region 70759	430 bp downstream
Tssr70760	transcription start site region 70760	507 bp downstream
Tssr70761	transcription start site region 70761	603 bp downstream
Tssr70762	transcription start site region 70762	622 bp downstream
Tssr70763	transcription start site region 70763	815 bp downstream