rs235687809 SNP Detail

Summary

• ID
  rs235687809
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:144133120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGTCCCTT GGGCTCCCGA GGCTGGACAC
  CCATGCGACG ACACACCGTC CCCCGGCTCA GGCCATGGCT CCCCTGGACT TTGTTGGCAA
  TCACCCAGAC CTGGAACAGA CTTTTGTTGG GGCAGCTGGA TACAGAAGGG GGAGACCAGA
  R
  GGGGGACCCT TCTTCCCACG GCCAAGAAAC CTGATCTCCT CTACCTCACC TGGTCCAGGG
  GTCCCACAGA CACTTTGCGT ACATTGTTGG ATACATGCTC CCAGCTGGAG CCCTGCGGGT
  AGCTGGGGGT GATCCCTGCT CGGTACCACA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321709381	CHEV_5_144957171	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235687809					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:144133120 () rs orientation: forward

Symbol	Name	Function Class
Bhlha15	basic helix-loop-helix family, member a15	1861 bp downstream
Rr624360	regulatory region 624360	1572 bp distal
Tecpr1	tectonin beta-propeller repeat containing 1	Intron