rs235691606 SNP Detail

Summary

• ID
  rs235691606
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40368518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTT CAGTGGGAGA CCGAAAGGAA
  C
  AACAAAGACC CCAATACATG GCCCA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322916257	CHEV_9_40264807	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235691606					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40368518 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	855 bp distal
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676839	regulatory region 676839	1797 bp distal
Rr676840	regulatory region 676840	968 bp distal
Rr676841	regulatory region 676841	1366 bp distal
Rr676842	regulatory region 676842	1459 bp proximal
Rr676843	regulatory region 676843	1830 bp proximal
Tssr84449	transcription start site region 84449	1901 bp downstream
Tssr84450	transcription start site region 84450	1312 bp downstream
Tssr84451	transcription start site region 84451	433 bp upstream
Tssr84452	transcription start site region 84452	461 bp upstream
Tssr84453	transcription start site region 84453	1202 bp upstream
Tssr88934	transcription start site region 88934	1838 bp upstream
Tssr88935	transcription start site region 88935	1787 bp upstream
Tssr88936	transcription start site region 88936	1766 bp upstream
Tssr88937	transcription start site region 88937	1702 bp upstream
Tssr88938	transcription start site region 88938	1445 bp upstream
Tssr88939	transcription start site region 88939	1410 bp upstream
Tssr88940	transcription start site region 88940	1378 bp upstream
Tssr88941	transcription start site region 88941	1089 bp upstream
Tssr88942	transcription start site region 88942	1074 bp upstream
Tssr88943	transcription start site region 88943	1046 bp upstream
Tssr88944	transcription start site region 88944	998 bp upstream
Tssr88945	transcription start site region 88945	981 bp upstream
Tssr88946	transcription start site region 88946	885 bp upstream
Tssr88947	transcription start site region 88947	856 bp upstream
Tssr88948	transcription start site region 88948	826 bp upstream
Tssr88949	transcription start site region 88949	250 bp downstream