rs235696661 SNP Detail

Summary

• ID
  rs235696661
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:21321183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCCCGGC CCGCCCCTTA
  AGCGACACCC ACCTTCCTAT TCCCTCGAGG GCTGAGAAGT TGGGGGCCTG GAATCAGGTC
  TCGCACGCTG CACGAGCGTG GCCGAGGCGA CCTCCCCTCC GCTCCCGTCA CACGCAAACA
  CCTGGAGCCT GGCGCCAGCG TGCGCAGCCC CTGACCCTCC AGCCCGCCGC CTCCGGACAC
  Y
  GGAGCCCCCA CTTTCGCCAC ACACCTCCCC TCCCCCTCCT TCCCCCCTCC CAATGCGGAA
  ATGTCCCTAC TGCTCAGAGC GACAGGCACA GCCGCCAGTC CGGAGCCGAA GTTTGCCTAA
  GGACCTGGCC AATGAGACAC GCGGAGGTGG CAGGGGGCGG GGCGTTCGAG GCCCGAGGGA
  GGCGGGCGCA GAAGCGAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382665849	MGP_WTSI_11_21271186	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235696661					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382665849	MGP_WTSI_11_21271186	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:21321183 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2630	CpG island 2630	within coordinates
Gm12043	predicted gene 12043	within coordinates
Rr246416	regulatory region 246416	within coordinates
Rr402440	regulatory region 402440	within coordinates
Tssr3440	transcription start site region 3440	405 bp upstream
Tssr3441	transcription start site region 3441	377 bp upstream
Tssr3442	transcription start site region 3442	157 bp downstream
Tssr100572	transcription start site region 100572	446 bp downstream
Tssr107064	transcription start site region 107064	698 bp upstream
Tssr107065	transcription start site region 107065	600 bp upstream
Tssr107066	transcription start site region 107066	527 bp upstream
Tssr107067	transcription start site region 107067	510 bp upstream
Tssr107068	transcription start site region 107068	494 bp upstream
Tssr107069	transcription start site region 107069	within coordinates
Tssr107070	transcription start site region 107070	81 bp downstream
Ugp2	UDP-glucose pyrophosphorylase 2	within coordinates