rs235698886 SNP Detail

Summary

• ID
  rs235698886
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108640784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGATTACA GTGGGAGCTG
  TAACAGTTTC TTGGGCATGG TGGTGCATGC CTGTAGTCCT GTCCTTGAGA GGCAGATGGA
  GCCCCTTAAA TTCATAGCCA GCCAGTTTTG CATAGGGAAT TCCAAGCCTT TTAAGACTAA
  ATAGGGAGAT CCTAGATCCT ATCTCGTACA AAAAAAGGGG TGGGGGGCAA GGGAGACAAT
  R
  TTTTGTTTAG GCGGTATTTG TTTTATATAG TTTCTTTTTA TGAGTCTCTG GACTTCTGCT
  TCCATGAAAC TGTTGCTATA CTAACTTATT GAGGATGGGT GTGGTAGTGC AGACCTGTAG
  GCCCAGCAGT CTGAAAGTTA AGATAGGCTC ATATGCGTTC AAGGCCAGCT TGGGTTGCTG
  AGTAACTCAG TGTCACTCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321893494	CHEV_6_108613817	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235698886					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108640784 () rs orientation: forward

Symbol	Name	Function Class
Bhlhe40	basic helix-loop-helix family, member e40	Intron
Rr399817	regulatory region 399817	1941 bp downstream
Rr636159	regulatory region 636159	1836 bp distal
Rr636160	regulatory region 636160	within coordinates
Tssr58079	transcription start site region 58079	1827 bp downstream
Tssr58080	transcription start site region 58080	1480 bp downstream
Tssr58081	transcription start site region 58081	1045 bp downstream
Tssr58082	transcription start site region 58082	681 bp downstream
Tssr58083	transcription start site region 58083	916 bp upstream
Tssr58084	transcription start site region 58084	1190 bp upstream
Tssr62392	transcription start site region 62392	1162 bp downstream