rs235700583 SNP Detail

Summary

• ID
  rs235700583
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:100807948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAAGGACA ACCCATTCAC
  ATCGGTGACC CAGGTCAGTG TCCACCCAAC ATGGGCCTGA AAAGCACACA GGGGCTTGTG
  CTGTTCTTAT GGGGAGGGTC TCAAGGGTGA GGGACTGGGG TGAAACCCAG AAGTCCAGTA
  CTGGGTGCTC TCAGGCTTAA GGCAGCACTG TGCCACACTA GGGGGCCTCA TCTTGAGGAC
  Y
  TGTGATGCAC ACTCAACTCC TATGAGTATC ATGTGATCAC CACTGGCCTT GGGGATTGGA
  GGGTCACAGT GGGACTCTTT GTTTCAGGTG TTATCCACAA CCATGCACAC CACACCTCTC
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC ACACACACAC ACACCATAAC ATTATTAAAT
  AAAACTCAAA TTTGCATTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SPRET/EiJ	ZALENDE/EiJ
ss387107176	MGP_WTSI_12_102079899	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SPRET/EiJ	ZALENDE/EiJ
rs235700583					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387107176	MGP_WTSI_12_102079899	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:100807948 () rs orientation: forward

Symbol	Name	Function Class
Dglucy	D-glutamate cyclase	within coordinates
Rr403460	regulatory region 403460	149 bp downstream
Rr471351	regulatory region 471351	1970 bp distal
Rr471352	regulatory region 471352	1445 bp distal
Rr471353	regulatory region 471353	265 bp distal