rs235701295 SNP Detail

Summary

• ID
  rs235701295
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:105431503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTAAAGAT ATCTGACTCT
  TGGCAAATTA CAATTGAGAG GCGAGTTGGT ATACAGGTAA ATCGGGAGTA CTATTCAGGA
  AGTGAAGGGG CCTTGTGGGG TAAATGTTGA CTAGTCAGTC TATAAACTTT AGGTTCGGAG
  CAATTAAAAC GGCTGATCAA AAGATTGCGA ATATGCAAAG CATATTTGAA AAACCGGCCC
  R
  GGAATCGGGA ATGGAAGTGG GAAGAACTAC CCCCCCCCCA AAAAATATAT ATATATATAT
  CTTGCTTTCA CTTGAATACC AAAGTTTACA TTTGCCTAGA GTGATTTGTC TTGACTTCTC
  AATGATTTCT CCTTTGAGAA GTGAAACAAC AGCCGACCAA TGCTGGGCAA GGTGCTCACA
  TGTGTGAACC TGAAACTGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389811529	MGP_WTSI_13_106085075	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235701295					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389811529	MGP_WTSI_13_106085075	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:105431503 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6065	CpG island 6065	187 bp distal
Rnf180	ring finger protein 180	97 bp upstream
Rr389014	regulatory region 389014	1961 bp upstream
Tssr123954	transcription start site region 123954	1980 bp upstream
Tssr123955	transcription start site region 123955	693 bp upstream
Tssr123956	transcription start site region 123956	655 bp upstream
Tssr123957	transcription start site region 123957	637 bp upstream
Tssr123958	transcription start site region 123958	576 bp upstream
Tssr123959	transcription start site region 123959	524 bp upstream
Tssr123960	transcription start site region 123960	329 bp upstream
Tssr123961	transcription start site region 123961	166 bp upstream