rs235704472 SNP Detail

Summary

• ID
  rs235704472
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54626780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGTGCCT TTGTTCAGAT
  GGACAGCCAC GTACAGAGGT CATGCTCCTG TGTAAGCTCT GCCACAGTGA GACACTAAGT
  GGATGCTTGA CCTGAAACAG CTGCACAGCA GTGAAATCTC AAGCCATTTC TCCCCAGGGA
  CTCGTTCCTA AGTTCCTAAA TGGGACACAC CTGAGGCATT CTCAGTGTCT TTCTTTTTTT
  K
  TTGTTGTTTT GTTTTGTTGT TGTTGTTGTT TTTGTTTTTC AAGACAGGGT TTCTCTGTGT
  AGCCCTGGCT GTCCTGGAAC TCACTTTGTA GACCAGGCTG GCCTCAAACT CAGAAATCCG
  CCTGCCTCTG CCTCCCAAGT GCTGGGATTA AAGGCATGCG CCACCATTGC CCAGCTCTGG
  CTCAGATTCT TGTACAAGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320772418	CHEV_3_54523281	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235704472					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54626780 () rs orientation: forward

Symbol	Name	Function Class
Rr72352	regulatory region 72352	980 bp distal
Rr83073	regulatory region 83073	84 bp distal
Supt20	SPT20 SAGA complex component	within coordinates
Tssr29138	transcription start site region 29138	1763 bp downstream