rs235715991 SNP Detail

Summary

• ID
  rs235715991
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165481865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAGTCCT AATTCTGATG
  TTCAGGACTG TGAGAAAGTA CATTTCCTTT ATCTATCTAT CTATCTATCT ATCTATCTAT
  CTATCTATCT ATCTATCTAT CTATGTATCT ATCTATCTAT CTATCTATCT ATCTATCTAT
  CTATGTATCT ATCTATCTAT CTATCTATCT ATCTATTATC TATTTATTTA TATTTATACT
  Y
  ATGTGCTTAT TTATGTATTT ATTTATAGGC AGGGTCTTCA ACTTTTTCAC GGGCTCACTA
  TGCCTTTTTG TTTGGACTCA CTAGTAGCCC AGGCTAGCCT TGAATTTACA TTGACCTTCC
  ATTTCACATT GAGTGCTGGG ACGACAGGCA GGCGCTGCGC ACCCAGCTCA TTGGTATTGT
  TTTAAGCCAC TAAGCCTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ
ss352246337	MGP_WTSI_1_167584427	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	C	T	C	C	C	T	T	T	C	C	C	T	T	T	T	C	T	C	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ
rs235715991					SNP	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	C	T	C	C	C	T	T	T	C	C	C	T	T	T	T	C	T	C	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352246337	MGP_WTSI_1_167584427	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165481865 () rs orientation: forward

Symbol	Name	Function Class
Rcsd1	RCSD domain containing 1	within coordinates
Rr422410	regulatory region 422410	236 bp distal
Rr422411	regulatory region 422411	479 bp distal
Rr422412	regulatory region 422412	1092 bp proximal
Tssr9810	transcription start site region 9810	410 bp downstream
Tssr9811	transcription start site region 9811	974 bp upstream
Tssr9812	transcription start site region 9812	1214 bp upstream
Tssr14774	transcription start site region 14774	1706 bp upstream