rs235718731 SNP Detail

Summary

• ID
  rs235718731
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:43800121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGAACCCG CCGCTCCGAG
  GGCGTGGGCG GGCCTGGAGA ATGACCTTGG CGGGGAAGTT ACCTGCCCTC CCGACAGAGG
  CGGGGACCGG GAGGAGGACC GACTCCCCTG GGCGCGGCTG AGCCTGCGAC CCCGCACGGC
  AGGCTCGGGA GTGCCGGGCG GAGTCGCCCA CCTGTGAGCA CCGCCGGTGC GCGCGCCTGC
  S
  GAGCGAGCCA GTCGCCCCCG GTCGCCGCTC CGCAGGTCGG CGCGCGCTTC CGGGTGCCCC
  GCCCCCGGCG CCGGGATCCC GCCGCCCGCA CGTGCGCCGC CTGCCCACGA GGCCCCTCCC
  CCGCCGCGCT CCGGCCGGGC CACCTCGCAC CTGCGCCGGG GCCCTCGCGG TGCCGCCGGG
  GTGCGGGATC GGACCCCGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss396099561	MGP_WTSI_16_43979871	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs235718731					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396099561	MGP_WTSI_16_43979871	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:43800121 () rs orientation: forward

Symbol	Name	Function Class
4930552F14Rik	RIKEN cDNA 4930552F14 gene	within coordinates
Cpgi8279	CpG island 8279	within coordinates
Gm46552	predicted gene, 46552	251 bp upstream
Gramd1c	GRAM domain containing 1C	592 bp downstream
Tssr141154	transcription start site region 141154	within coordinates
Tssr141155	transcription start site region 141155	497 bp downstream
Zdhhc23	zinc finger, DHHC domain containing 23	within coordinates