rs235726317 SNP Detail

Summary

• ID
  rs235726317
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45817568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGGTCAC CGCCACTCTT
  CACAGGGAGC TGCCGCTACG CTGGCCCTTG GCACTGGCCA GCGCCACCTC CACCCCTTCC
  CCTCCGTCCT CACCGGCCGC CAGCTCCCGT CCCACTCCCA GGCCGGGCTC CCGCCCCTGT
  CCCCGCCGCC CCCTCCCCGC CGCCCCCTCC TCCTCCGCCG CGCCCCCCTA GTCCCGCCGT
  Y
  CCGACCCGCG CGCGCCGCCC CGCACACACC TCCCGCGCCG CGCCCCCGGG GAGCCAAGCG
  GGGGGGAGGG AAGGGACGCA CCTGAGCGGG CGGAGCGGGG GAGGGGGCGG CCAAGCCTGG
  GGGAGGGGTC GAGCGCTGGC CCGCGCGCGG CACCTCCCAC TTCCGGCGGC GCGAGCGCAA
  GGGGGCGAGG CCGGGGCGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	LG/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377444888	MGP_WTSI_9_45714353	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	LG/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235726317					SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377444888	MGP_WTSI_9_45714353	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45817568 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21697	CpG island 21697	within coordinates
Pcsk7	proprotein convertase subtilisin/kexin type 7	227 bp upstream
Rnf214	ring finger protein 214	within coordinates
Rr677992	regulatory region 677992	within coordinates
Rr677993	regulatory region 677993	127 bp proximal
Rr677994	regulatory region 677994	171 bp proximal
Rr677995	regulatory region 677995	238 bp proximal
Rr677996	regulatory region 677996	239 bp proximal
Rr677997	regulatory region 677997	589 bp proximal
Rr677998	regulatory region 677998	726 bp proximal
Rr677999	regulatory region 677999	1388 bp proximal
Tssr84815	transcription start site region 84815	243 bp upstream
Tssr84816	transcription start site region 84816	655 bp upstream
Tssr89273	transcription start site region 89273	99 bp downstream
Tssr89274	transcription start site region 89274	567 bp downstream
Tssr89275	transcription start site region 89275	628 bp downstream
Tssr89276	transcription start site region 89276	1315 bp downstream