rs235729575 SNP Detail

Summary

• ID
  rs235729575
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:3120925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCAGCTCAT AACCACCATA ACTCCAGCTC CTGAATGGAT
  CCGATGCCTT TCTTCTGGCC ACTACAGGCA TCTGCACATT TCTACACACA GATATAGACA
  T
  ATAAACATAA CTGAAAATAA AATCTGAAAA GAAAATAAAA AGGGTAGAGA GGGCCAGTGA
  GACAGCTCAG TGATTAAGGG GTTTGCTGCC AATCATGGT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323546729	CHEV_11_3070928	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235729575					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3120925 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2457	CpG island 2457			1381 bp proximal
Rr441479	regulatory region 441479			1535 bp distal
Rr441480	regulatory region 441480			713 bp distal
Rr441481	regulatory region 441481			within coordinates
Rr441482	regulatory region 441482			336 bp proximal
Rr441483	regulatory region 441483			1270 bp proximal
Rr441484	regulatory region 441484			1746 bp proximal
Sfi1	Sfi1 homolog, spindle assembly associated (yeast)			Intron
				Noncoding-Transcript-Variant
Tssr106448	transcription start site region 106448			1870 bp downstream