rs235730758 SNP Detail

Summary

• ID
  rs235730758
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:116951910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCGTCCGA GGCAGCCCCT
  GAGGGCCGAC CAGGCGCGCC GCGCGGGCAG CCGGCGGCCA GGCGGGAGAT GGTGCGCGGC
  ACCTCGGCGG GACCGCGCCG CCTCCCGCAG CCAGCGCTCG GCTGCCCCCC GCCGGCTCCC
  GCCGCCCGCC CGTCGCCGCG CCCCTGAGAG CAGCACCGCC TCAGCCACCG GCCGCGTCCC
  M
  CTCAGCGCCC GCAGTCGCCC GCGCCGTCTC GGCTTCGCAC TCGACCTCGG CGCGGCAAAC
  CGCTGGGGTC GCCACGGCCG CGCTTGCTGC CGCCGCCCCC CTGCGGGGGT GGCCGGGCTG
  CCCGGCTCGC GGGGCACCGC TCCGAGTGAG GCATCCACCA TGGTGAGGCC CCCGAGCCGC
  TGCCCGCGCG CCCCGCCGGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss355379019	MGP_WTSI_2_116947165	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs235730758					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355379019	MGP_WTSI_2_116947165	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:116951910 () rs orientation: forward

Symbol	Name	Function Class
Gm74661	predicted gene, 74661	471 bp downstream
Rr367269	regulatory region 367269	564 bp downstream
Rr373730	regulatory region 373730	1118 bp downstream
Rr397194	regulatory region 397194	1381 bp upstream
Rr563062	regulatory region 563062	942 bp distal
Rr563063	regulatory region 563063	994 bp distal
Rr563064	regulatory region 563064	within coordinates
Rr563065	regulatory region 563065	220 bp proximal
Spred1	sprouty protein with EVH-1 domain 1, related sequence	mRNA-UTR
Tssr19479	transcription start site region 19479	988 bp downstream
Tssr19480	transcription start site region 19480	675 bp downstream
Tssr19481	transcription start site region 19481	635 bp downstream
Tssr19482	transcription start site region 19482	574 bp downstream
Tssr19483	transcription start site region 19483	547 bp downstream
Tssr19484	transcription start site region 19484	524 bp downstream
Tssr19485	transcription start site region 19485	496 bp downstream
Tssr19486	transcription start site region 19486	431 bp downstream
Tssr19487	transcription start site region 19487	384 bp downstream
Tssr19488	transcription start site region 19488	280 bp downstream
Tssr19489	transcription start site region 19489	252 bp downstream
Tssr19490	transcription start site region 19490	30 bp downstream
Tssr19491	transcription start site region 19491	31 bp upstream
Tssr19492	transcription start site region 19492	1793 bp upstream
Tssr25740	transcription start site region 25740	1444 bp downstream