rs235741645 SNP Detail

Summary

• ID
  rs235741645
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116552800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTTTGGT TTCTTTTTGG
  TTTTGGTTTT TGTAGTTAGT TAACACTGAG AGGCAGTTAG GTATAGTGGG TTGCACCTAC
  AGTCTCAGTA CTTAGAAGGA AATTTGCTTG CTGCAAACTG GAGTCCAACA TGTGTTACAT
  TAAGTGAGTT CTTGTCTCAA AATAACAGAC ACTGGCCCCC CTAAAAAACA AACCAAATCA
  Y
  ATACACCCAA CAAAATCCCT GGGGTTGTAG CCTGATATTT GAAGGTTGCA GCTCCTGGGA
  TTTTGAAATG CTATGTATTT TGGGTTTTTA AGGCTTTTGG GTGGGGGTTG GGAGAGAGAA
  TCTGATGTAG CTTAGGCTGC TCTCTGTAGC TAAGTTTGAA CTTGAAAATC TCCATCTCCT
  CGATGCTGGT GCTGGGATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321277815	CHEV_4_116368208	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235741645					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116552800 () rs orientation: forward

Symbol	Name	Function Class
9530001N24Rik	RIKEN cDNA 9530001N24 gene	1474 bp upstream
Prdx1	peroxiredoxin 1	within coordinates
Tssr38561	transcription start site region 38561	1858 bp downstream
Tssr38562	transcription start site region 38562	1748 bp downstream
Tssr38563	transcription start site region 38563	1643 bp downstream
Tssr38564	transcription start site region 38564	1508 bp downstream
Tssr38565	transcription start site region 38565	1475 bp downstream
Tssr38566	transcription start site region 38566	416 bp upstream