rs235742078 SNP Detail

Summary

• ID
  rs235742078
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4644248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAACATTT TGGATAGACC
  CAGCTACTTT ACAATAGGAA TTCAAGTTGA CACAGAAATT ACTGCCGTAC TCCGTGCTTC
  TTGTCTGTTT CACGGCGTTT CCTACTTCCT CAGGGGACGC AAGGTGTCAC TTGGAATTTT
  GTGTTGTTAG CTTAGTTTAG GTAGTACAGA CTGGAGGCCA AACTAGGTGC TTAAGCCTTT
  R
  AGAAATTGCT AACTTCCCTT TCACGGTTTG CTGTATTGTC ATCCAGTGCT AAAACCTAAA
  AGCAATCTAG AAACATGGCC TACAACATTT ATACAAGTTG ATGGGAGGCC TGCAAAATTC
  AGTTATGTGC TTGCCATTAC GTTGGCGGTT ATTCTTATGA CTGGTGTGCT GCTGCTGTTC
  CAAGTAATGC TGGTAACCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323874154	CHEV_12_4601054	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235742078					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4644248 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4378	CpG island 4378	324 bp distal
Gm3625	predicted gene 3625	517 bp upstream
Gm48678	predicted gene, 48678	1092 bp downstream
Itsn2	intersectin 2	within coordinates
Rr265387	regulatory region 265387	within coordinates
Tssr3767	transcription start site region 3767	416 bp downstream
Tssr112557	transcription start site region 112557	1600 bp downstream
Tssr112558	transcription start site region 112558	1575 bp downstream
Tssr112559	transcription start site region 112559	1412 bp downstream
Tssr112560	transcription start site region 112560	1303 bp downstream
Tssr112561	transcription start site region 112561	1161 bp downstream
Tssr112562	transcription start site region 112562	1101 bp downstream
Tssr112563	transcription start site region 112563	384 bp downstream
Tssr115637	transcription start site region 115637	1724 bp upstream
Tssr115638	transcription start site region 115638	553 bp upstream
Tssr115639	transcription start site region 115639	512 bp upstream
Tssr115640	transcription start site region 115640	495 bp upstream
Tssr115641	transcription start site region 115641	458 bp upstream
Tssr115642	transcription start site region 115642	436 bp upstream
Tssr115643	transcription start site region 115643	905 bp downstream