rs235743818 SNP Detail

Summary

• ID
  rs235743818
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:154406641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGAGGCAA GACCCTGAGC
  TCTCCTGGAG CCGCGGCACC ACCATCGGGG AGTCCCGCGC CGCGCCTCGG GAGGGACCCC
  TCCGGCTGGA GACACGCCCT CCTGCCCGCT GCCGCGCCTG CCCGGAGAGC CCCCCAGCTT
  GGCGGCCTCC GCGCCGCCCC CACCCCGCCC TACCCGGGGC GACCTCCCCA CCCCCCGCCG
  S
  CTCCCAGCCT GGGGGGCGAC ACGCGACACT GCCGCGTTCC CGCTCAGAGC GGGCGGGGCT
  GGGAGCGGCC CCCGCGGCTC CTCATGACCC CACTCACCGG ATCCCCGAAG CCAACGACGG
  GATGGCGCGG AGAGCGGTGG TGGTGGTGGC GCTAGCGCCA GAAGACTCTG CGCGCCAGCC
  TGGAACACGA GGACAGAGAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss404942111	MGP_WTSI_X_152058188	EVA_MGPV3	EVA_MGPV3	f	SNP	G	C	G	G	C	C	G	G	G	G	G	G	G	C	G	G	C	G	G	G	C	G	G	G	C	C	G	C	G	C	C	G	G	C	G	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs235743818					SNP	G	C	G	G	C	C	G	G	G	G	G	G	G	C	G	G	C	G	G	G	C	G	G	G	C	C	G	C	G	C	C	G	G	C	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404942111	MGP_WTSI_X_152058188	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:154406641 () rs orientation: forward

Symbol	Name	Function Class
Cpgi23014	CpG island 23014	within coordinates
Cpgi23015	CpG island 23015	949 bp proximal
Gm15156	predicted gene 15156	284 bp downstream
Ptchd1	patched domain containing 1	within coordinates
Ptchd1as	Ptchd1 antisense RNA	891 bp upstream
Rr694584	regulatory region 694584	846 bp distal
Rr694585	regulatory region 694585	within coordinates
Rr694586	regulatory region 694586	640 bp proximal
Rr694587	regulatory region 694587	1141 bp proximal
Tssr162424	transcription start site region 162424	980 bp downstream
Tssr162425	transcription start site region 162425	947 bp downstream
Tssr162426	transcription start site region 162426	834 bp downstream
Tssr164445	transcription start site region 164445	143 bp upstream
Tssr164446	transcription start site region 164446	84 bp upstream
Tssr164447	transcription start site region 164447	160 bp downstream
Tssr164448	transcription start site region 164448	435 bp downstream
Tssr164449	transcription start site region 164449	490 bp downstream