rs235748321 SNP Detail

Summary

• ID
  rs235748321
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88243876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTGGTGG GTGGCGGGGG
  CCTGTGACCA GGAGGTGCCC TCGGGCCCAG GCACCATGAG CCAAGGCCCT CCTCCAGGGG
  AGAGCAGCGA ACCCGAGGCA AAGGTCCTCC ACACCAAGCG GCTTTACCGG TGAGAGGGCC
  AGGGTGTGTG TGTGCAGCCG CGGCGGGGAA GCGGGGCCGG CGAGGGGCGG GGCCTGCGGC
  K
  GGCGGGCGGG CCGGGCGAGG GCGGGGGTGC AGCGGGGTGC GGGCGGGCGT CCCGGGAGGA
  GCTGAGAAGC AGTGGGTGGG TGGGTGGGTG GGAGGTTTGA AGCGAGTGCA GGAACCCCTG
  CCGCGGTGAG CCTAGCGTGA CGCGGGGCTT TGCGGAGTTG GAGAGAGCCG GTGGGAATTG
  GGGGCAGCTG AGGATGGGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss358793965	MGP_WTSI_3_88140491	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	G	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs235748321					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	G	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358793965	MGP_WTSI_3_88140491	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88243876 () rs orientation: forward

Symbol	Name	Function Class
BC038331	cDNA sequence BC038331	391 bp upstream
Cpgi13371	CpG island 13371	within coordinates
D3Mit175	DNA segment, Chr 3, Massachusetts Institute of Technology 175	1569 bp distal
Gm65350	predicted gene, 65350	1831 bp downstream
Rr579719	regulatory region 579719	1575 bp distal
Rr579720	regulatory region 579720	299 bp distal
Rr579721	regulatory region 579721	within coordinates
Rr579722	regulatory region 579722	1086 bp proximal
Rr579723	regulatory region 579723	1826 bp proximal
Smg5	SMG5 nonsense mediated mRNA decay factor	within coordinates
Tssr29942	transcription start site region 29942	265 bp downstream
Tssr29943	transcription start site region 29943	1274 bp upstream
Tssr34003	transcription start site region 34003	371 bp upstream
Tssr34004	transcription start site region 34004	43 bp upstream