rs235753183 SNP Detail

Summary

• ID
  rs235753183
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:112416043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAT ACACGGATAG
  ACAAGCAGAG AGATCACATG CACACACACC CCACACAGAG ATCTCTCACA CATATACACA
  CAGTCTTCCG GGACTAAATT ATGGGCACGT GGCAAGTTCG ACCTCATTCT AAATACTAGC
  CCACAGGTGG AGAGAATCTC ACTGCTCAGG AGTAATGAGG CCCTGGCCAG AACTGATATG
  S
  ACAGAGGGTA GGTAGCAGAG GCTCCTGGGT GAGATGGCAC CCTGTCTACA CCTCAGTGTT
  GCTGGCTGAA CAATAAGTGG GTGAGGCACC CTTATCCACT TTGATTCCTG AGATCTGAGG
  TTCCCAAGCA AAGCCCTCTA TTCTACCTCC ATGAGAACCT AGGGAGGGTC AGGTGCCTTA
  CCTCCAAGTA TTGTCCCCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366277526	MGP_WTSI_5_112697197	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235753183					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366277526	MGP_WTSI_5_112697197	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:112416043 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16256	CpG island 16256	1095 bp proximal
Crybb1	crystallin, beta B1	within coordinates
Tssr47978	transcription start site region 47978	652 bp downstream
Tssr47979	transcription start site region 47979	620 bp downstream
Tssr47980	transcription start site region 47980	1133 bp upstream
Tssr47981	transcription start site region 47981	1280 bp upstream
Tssr47982	transcription start site region 47982	1297 bp upstream
Tssr47983	transcription start site region 47983	1311 bp upstream
Tssr47984	transcription start site region 47984	1320 bp upstream
Tssr47985	transcription start site region 47985	1331 bp upstream
Tssr52559	transcription start site region 52559	815 bp upstream
Tssr52560	transcription start site region 52560	776 bp upstream
Tssr52561	transcription start site region 52561	1308 bp downstream
Tssr52562	transcription start site region 52562	1352 bp downstream