rs235763840 SNP Detail

Summary

• ID
  rs235763840
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:96243176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCCGCCT CCTCGGTCCG
  GGCCTCCGAG GTCGGATCAC CATCAGGTGG GTAAACGTAT TAGGGGCGGG GTGAGGGGCA
  GTTGGAAGAG AAGGGGAGAA TGTGAGGTGA TGGGGCTCCT GGTGGGGTTC CCTAGGTCGA
  CGGATCTGGG GCGAGGGAAG CAGAGTATCC CGCTGGGGTT CAGGCCTAGC CACTGTTAGC
  W
  TCCCCACCCC CAGAAAATTT TGGAAGCTGA TTGAGGGTGG GGAGGATGCT TTTTTTTTTT
  TTTTTTTTTT AAATGTGCTT AGAAAAAAAT GATTCGATTG AAGGGTTTCC CCGGTTTCTG
  TGTAGAGGAA TGAAGCGTGT CTGGGATTGA ATCTGGAGCC TGGAAAAGAT GCGATGCCTC
  TAGCTCTCCT AAAGCTAGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384367048	MGP_WTSI_11_96213664	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235763840					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384367048	MGP_WTSI_11_96213664	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96243176 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3656	CpG island 3656	174 bp distal
Cpgi3657	CpG island 3657	318 bp proximal
Hoxb2	homeobox B2	Intron
Hoxb3os	homeobox B3 and homeobox B2, opposite strand	within coordinates
Rr141	regulatory region 141	1902 bp distal
Rr455384	regulatory region 455384	1882 bp distal
Rr455385	regulatory region 455385	709 bp distal
Tssr104519	transcription start site region 104519	715 bp downstream
Tssr104520	transcription start site region 104520	476 bp downstream
Tssr104521	transcription start site region 104521	442 bp downstream
Tssr104522	transcription start site region 104522	382 bp downstream
Tssr104523	transcription start site region 104523	332 bp downstream
Tssr104524	transcription start site region 104524	280 bp downstream
Tssr104525	transcription start site region 104525	212 bp downstream
Tssr104526	transcription start site region 104526	514 bp upstream
Tssr104527	transcription start site region 104527	536 bp upstream
Tssr104528	transcription start site region 104528	725 bp upstream
Tssr104529	transcription start site region 104529	777 bp upstream
Tssr104530	transcription start site region 104530	805 bp upstream
Tssr104531	transcription start site region 104531	974 bp upstream