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rs235771704 SNP Detail
Summary
  • ID
    rs235771704
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr12:112642039 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTCCTACTTC CCCCATCCCG
    TTGCTACACA GTTAGAGCCA GCAGGGCGCC CTCTTGTGGA ACACAGCAAT TTCTGGCTGT
    TCTCTAGTGA CCCTTCTCAC TCGGATGCTC TTCCTGGAAG CCACTGTTGG AGACAGCTCC
    TACCTGTGGT GAGCCCTGTT TCTATGCAGT AACCAGTCCC GCCTCCCTTC TTTGTGTCTC
    Y
    ATCTTCCCCC GAGTCCGGAG TGGGTTGGGG GATAGGCGAC TCCTTCTGGG TCCACACTTT
    GGCAACACCT CTTTGGGCCT CCTAGACAGA GCCACAAGGT GAGTAAGGTC CGCCTTACTG
    AGACTTGCCA CTGGCCTGCT CTGCAGCCAT GCTCTCCAAC AAAAACTGGT CCCGGGGGCT
    GGCGAGATGG CTCAGCGGGT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss387390215 MGP_WTSI_12_113913816 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs235771704 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss387390215 MGP_WTSI_12_113913816 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:112642039 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Akt1 thymoma viral proto-oncogene 1 773 bp upstream
Cpgi5173 CpG island 5173 696 bp distal
Gm30150 predicted gene, 30150 within coordinates
Rr369631 regulatory region 369631 66 bp downstream
Tssr115391 transcription start site region 115391 1182 bp downstream
Tssr117877 transcription start site region 117877 1578 bp upstream
Tssr117878 transcription start site region 117878 1519 bp upstream
Tssr117879 transcription start site region 117879 1330 bp upstream
Tssr117880 transcription start site region 117880 1238 bp upstream
Tssr117881 transcription start site region 117881 1220 bp upstream
Tssr117882 transcription start site region 117882 841 bp upstream
Tssr117883 transcription start site region 117883 791 bp upstream
Tssr117884 transcription start site region 117884 768 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory