rs235771704 SNP Detail

Summary

• ID
  rs235771704
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112642039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTACTTC CCCCATCCCG
  TTGCTACACA GTTAGAGCCA GCAGGGCGCC CTCTTGTGGA ACACAGCAAT TTCTGGCTGT
  TCTCTAGTGA CCCTTCTCAC TCGGATGCTC TTCCTGGAAG CCACTGTTGG AGACAGCTCC
  TACCTGTGGT GAGCCCTGTT TCTATGCAGT AACCAGTCCC GCCTCCCTTC TTTGTGTCTC
  Y
  ATCTTCCCCC GAGTCCGGAG TGGGTTGGGG GATAGGCGAC TCCTTCTGGG TCCACACTTT
  GGCAACACCT CTTTGGGCCT CCTAGACAGA GCCACAAGGT GAGTAAGGTC CGCCTTACTG
  AGACTTGCCA CTGGCCTGCT CTGCAGCCAT GCTCTCCAAC AAAAACTGGT CCCGGGGGCT
  GGCGAGATGG CTCAGCGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387390215	MGP_WTSI_12_113913816	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235771704					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387390215	MGP_WTSI_12_113913816	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112642039 () rs orientation: forward

Symbol	Name	Function Class
Akt1	thymoma viral proto-oncogene 1	773 bp upstream
Cpgi5173	CpG island 5173	696 bp distal
Gm30150	predicted gene, 30150	within coordinates
Rr369631	regulatory region 369631	66 bp downstream
Rr473553	regulatory region 473553	1340 bp distal
Rr473554	regulatory region 473554	1184 bp distal
Rr473555	regulatory region 473555	1205 bp distal
Rr473556	regulatory region 473556	within coordinates
Rr473557	regulatory region 473557	602 bp distal
Rr473558	regulatory region 473558	137 bp distal
Rr473559	regulatory region 473559	33 bp proximal
Rr473560	regulatory region 473560	279 bp proximal
Tssr115391	transcription start site region 115391	1182 bp downstream
Tssr117877	transcription start site region 117877	1578 bp upstream
Tssr117878	transcription start site region 117878	1519 bp upstream
Tssr117879	transcription start site region 117879	1330 bp upstream
Tssr117880	transcription start site region 117880	1238 bp upstream
Tssr117881	transcription start site region 117881	1220 bp upstream
Tssr117882	transcription start site region 117882	841 bp upstream
Tssr117883	transcription start site region 117883	791 bp upstream
Tssr117884	transcription start site region 117884	768 bp upstream