rs235772287 SNP Detail

Summary

• ID
  rs235772287
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84572267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TACTTTGAA AGAGGATTTG CGCGGGTGCT
  GGCCTAATGT GATTTGAAAT TTGATTTTTG TTTTCTTCGC GTTAACTTTT TAGGAAAAGG
  TAGGAAATTA CTATCTATTT TTAAGTGAGG AAGTCCttgt tgttgttgtt gttgttgttg
  W
  tgATGATGAT GATAAACACC CTCCCCCTCC CTGTTATCTT TTGTTCTGTT GGTTTCTTCA
  CTAGGGAGGG GTAAATGTGT TATTGTTGAG GTTCAAGTTC TAGTCACAGT ACTTAATAGT
  AGTTCAATTA TTCTGCCCGA CGAACGTCTT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325261870	CHEV_16_84775624	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235772287					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84572267 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8384	CpG island 8384	147 bp distal
Jam2	junction adhesion molecule 2	within coordinates
Tssr139178	transcription start site region 139178	1724 bp downstream
Tssr139179	transcription start site region 139179	1504 bp downstream
Tssr139180	transcription start site region 139180	1475 bp downstream
Tssr139181	transcription start site region 139181	1286 bp downstream
Tssr139182	transcription start site region 139182	1234 bp downstream
Tssr139183	transcription start site region 139183	1205 bp downstream
Tssr139184	transcription start site region 139184	1182 bp downstream
Tssr139185	transcription start site region 139185	1141 bp downstream
Tssr139186	transcription start site region 139186	1085 bp downstream
Tssr139187	transcription start site region 139187	1065 bp downstream
Tssr139188	transcription start site region 139188	1047 bp downstream
Tssr139189	transcription start site region 139189	956 bp downstream
Tssr139190	transcription start site region 139190	940 bp downstream