rs235774741 SNP Detail

Summary

• ID
  rs235774741
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:41037366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGGCGGCC GGGCTCTCCT
  CGCCCGCCCC GGGTCCCGAG CACAGACCAC GCCGCCCCCA GCGCACCCAC AGCCGGTAGG
  CCCCCAGCAG CACCAGCGCC ACCAGCGCCA CGTTCAGCAG CATCTCCCCG CCCGTCGCCA
  GCAGCGCCGC CACCCAACTG CTCCTCGCCG CCGTCGCTCC GGCGCCACCC GGGCTCCCGT
  Y
  GCCGCCACTC TCCCCGCCGC TCCCCAGGGT GCTTAGCTTT ACGTCCCCAT CACCCGCCGC
  CATCACTGCC CGCCAGCGCC TTCCTCCTCC CGCCCCCTGC CCTCCCCAAG CCCGCGGCCC
  TGCCCACCAG GCGGCGCTCA GCCAATCACG TGAGGGGCTG GGGCGTGGCA GCGCCGGCTG
  CTTATTGGCT GTTGGCTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357674159	MGP_WTSI_3_40886853	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235774741					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357674159	MGP_WTSI_3_40886853	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41037366 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13116	CpG island 13116	within coordinates
Gm64404	predicted gene, 64404	405 bp upstream
Pgrmc2	progesterone receptor membrane component 2	Coding-NonSynonymous
Rr397653	regulatory region 397653	within coordinates
Rr575891	regulatory region 575891	105 bp proximal
Rr575892	regulatory region 575892	120 bp proximal
Rr575893	regulatory region 575893	416 bp proximal
Tssr28988	transcription start site region 28988	498 bp upstream
Tssr33071	transcription start site region 33071	6 bp downstream
Tssr33072	transcription start site region 33072	61 bp downstream