rs235775353 SNP Detail

Summary

• ID
  rs235775353
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72305533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAATTAGCT GCTTCTCTTG ATGCCTAAGT
  TGGAGACTGG AGTTCTTTGT CTCTAGCACA GAGGGAGGGT GACCCCTGGG CAGCTCCTTC
  CAATCCATTG TCTTCCTCGG TTATTTATGT CTTTATGGTC AGTACCTAGA GAGgtgtgtg
  W
  gtgtgtgtgt gtgtgtgtgt gtgtgtgtTG CGCATGCTCT CTTCACAGAA AAGGACTGTG
  GCAACATCAA TACTAAGAGA AAAGTTTTGA AATAAGGGGG AATGCTTACA CTTCAAGAAA
  TGTTTTAAAT CTATGATTAT AATTAAAGCT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342577	CHEV_2_72313246	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235775353					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72305533 () rs orientation: forward

Symbol	Name	Function Class
Cdca7	cell division cycle associated 7	1007 bp upstream
Cpgi11756	CpG island 11756	723 bp proximal
Rr397036	regulatory region 397036	577 bp upstream
Rr558978	regulatory region 558978	within coordinates
Rr558979	regulatory region 558979	480 bp proximal
Rr558980	regulatory region 558980	981 bp proximal
Tssr18351	transcription start site region 18351	807 bp upstream
Tssr18352	transcription start site region 18352	984 bp upstream
Tssr18353	transcription start site region 18353	1024 bp upstream
Tssr18354	transcription start site region 18354	1036 bp upstream