rs235778063 SNP Detail

Summary

• ID
  rs235778063
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:144039140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CATTGCAGA AAATACCGGG GAAGCTGGGA
  AAGATTATAT AGAAAGGTAG TGATGTTGCT ATGTAAGGAT ATTGACATTT AAATAGAAAA
  TTAACACTAG GTAGCACAGT GGATACAgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg
  T
  GAGAGAGAGA GAGAGACAAG GCGATTCCAG AAACTTCCAG TAGTTCTTGT GCCTATCAAT
  TTTTATGCAT TTTGGCatat atgtgtgtgt ttatgtatgt atgtatgtat gtatgtatat
  gtgtgtgtat atatatatat acacatatgc                                 
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321709187	CHEV_5_144863191	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235778063					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:144039140 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17002	CpG island 17002	1167 bp distal
Gm71412	predicted gene, 71412	1946 bp upstream
Lmtk2	lemur tyrosine kinase 2	within coordinates
Rr111126	regulatory region 111126	1661 bp proximal
Rr124743	regulatory region 124743	139 bp distal
Tssr49686	transcription start site region 49686	1939 bp downstream
Tssr49687	transcription start site region 49687	1926 bp downstream