rs235781883 SNP Detail

Summary

• ID
  rs235781883
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142133632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACTACAC CCCCATTATA
  CCCCCACTAT GCCCCTCCTG CCATGCCCCC CACTATGTCC CCCATTATGC CCCCGCTATG
  CCCCCGCTAT ACCCCCACTA TAACTCCCTC TATATCCCCC GCTATACCCC TACTATACCT
  CCCACTATAC TTCCACTATA CCTCCCCATT ATACCCCCTC GCTATAACCC ACGCTATACA
  M
  CCCCACCATG CCACACCCGC TATGCTCCCT CTTGCTACCC ACCCTCCTGC TTCACTTCAA
  ACTAAGCGGA TCCCTGACTT CTCCTAGTCT CTAATCTCAG CTTTGCAACT TCTTGCTACA
  GTTCCTAGGT TACCTGGGAC ATTGCAATGG TTGAACCCCA GCCTCTGCTT TTATGGCTAT
  GGGGTTTCGG TGGACGCACG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss373453207	MGP_WTSI_7_149765800	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	C	C	A	A	A	A	A	C	A	A	A	A	C	A	C	A	A	A	A	A	A	A	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs235781883					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	C	C	A	A	A	A	A	C	A	A	A	A	C	A	C	A	A	A	A	A	A	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373453207	MGP_WTSI_7_149765800	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142133632 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19965	CpG island 19965	417 bp proximal
Gm56421	predicted gene, 56421	1977 bp downstream
H19	H19, imprinted maternally expressed transcript	1749 bp upstream
Rr27	regulatory region 27	253 bp proximal
Rr370601	regulatory region 370601	353 bp upstream
Rr658231	regulatory region 658231	1260 bp distal
Rr658232	regulatory region 658232	615 bp distal
Rr658233	regulatory region 658233	within coordinates
Rr658234	regulatory region 658234	315 bp proximal
Rr658235	regulatory region 658235	411 bp proximal
Rr658236	regulatory region 658236	1816 bp proximal
Tssr2461	transcription start site region 2461	1969 bp downstream
Tssr70226	transcription start site region 70226	1921 bp downstream
Tssr70227	transcription start site region 70227	1839 bp downstream
Tssr70228	transcription start site region 70228	1826 bp downstream
Tssr75836	transcription start site region 75836	1998 bp upstream
Tssr75837	transcription start site region 75837	1975 bp upstream
Tssr75838	transcription start site region 75838	1905 bp upstream
Tssr75839	transcription start site region 75839	1883 bp upstream
Tssr75840	transcription start site region 75840	1854 bp upstream
Tssr75841	transcription start site region 75841	1827 bp upstream
Tssr75842	transcription start site region 75842	1810 bp upstream
Tssr75843	transcription start site region 75843	1804 bp upstream
Tssr75844	transcription start site region 75844	1774 bp upstream
Tssr75845	transcription start site region 75845	1741 bp upstream