rs235785832 SNP Detail

Summary

• ID
  rs235785832
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101899411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCAGGAC CCCTGCCCGA
  CGGGCTCGAC CCGGGCCTCA CCTGGTGCCC TCCCCGCGGC GGGGGAGCTG GGGGCGGCGG
  CGGCGGCTCT GGGCTCAAGA AGGAAGTGAG AACTGGAGGC CGGAGGAAGT GGGGGGGTGG
  GGGCCGGGCC GGCAGGGCCG GGGCGGGGCG CGGGGGCGGG CCGGCCGGGG CGGGGCGGAC
  Y
  AGGAAGTCGG AGGCCTCCCC CACCCTCCAG CCTCGGGTTT TCTGCAAGCT TTGCCCTCCG
  CACAGTCCCG CACACCCTGC TTCTCTCCAC TCTTCGCCCC GTGAGCCCTG AGACCCCTTG
  AGTCTGGCCT CTCAAGGTCA GGTCTCCCCG CTTTCACTTG GCATCTCCCC CCCACCCCCC
  AGCAGGGGCC CTAAGCTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss372554832	MGP_WTSI_7_109398718	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs235785832					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372554832	MGP_WTSI_7_109398718	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101899411 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	within coordinates
Rhog	ras homolog family member G	86 bp upstream
Rr652562	regulatory region 652562	127 bp distal
Rr652563	regulatory region 652563	within coordinates
Rr652564	regulatory region 652564	717 bp proximal
Tssr2354	transcription start site region 2354	55 bp upstream
Tssr68328	transcription start site region 68328	511 bp downstream
Tssr68329	transcription start site region 68329	490 bp downstream
Tssr68330	transcription start site region 68330	16 bp upstream
Tssr73939	transcription start site region 73939	830 bp upstream
Tssr73940	transcription start site region 73940	783 bp upstream
Tssr73941	transcription start site region 73941	730 bp upstream
Tssr73942	transcription start site region 73942	645 bp upstream
Tssr73943	transcription start site region 73943	118 bp upstream
Tssr73944	transcription start site region 73944	81 bp upstream
Tssr73945	transcription start site region 73945	66 bp upstream
Tssr73946	transcription start site region 73946	119 bp downstream
Tssr73947	transcription start site region 73947	262 bp downstream
Tssr73948	transcription start site region 73948	287 bp downstream
Tssr73949	transcription start site region 73949	323 bp downstream
Tssr73950	transcription start site region 73950	372 bp downstream