rs235793617 SNP Detail

Summary

• ID
  rs235793617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79491710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCAGGTA CTCAGTACGC
  TCTACCAGTT CCGTTTTGTC AATGTTAGGT GCCGGAGTGC CGTCCAGGGT TCGCAACACC
  ACCCTGTGGT TTCCTTTGAG GGTGTAGTTG AGCTTTTTGC TGTGGATGAT AATGACATCC
  GTGGTCTGGT TGCAGGTAAA GCGAACAGTA CTGTTGCCTT GGAAGATGTA CAGGCCCTGA
  Y
  TGTTGGGGGT GAGGTAGGGT CTCAGGATCA CCCGGTAGGA GTCAGGTATA AGAGTCTTAG
  GCAAGCGATA CTGGTTCCAA GGCTTGCTTT CATCTACAGC AGGGGTGGTG GTTGCGGTGG
  TGGCTGAGGT GCTGCCCGGG AGCGTGGGGG CTGTGGCAGA GTTCTCTGCA TTCCTATTCT
  TCTCCTGAGC GTAGACCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372032947	MGP_WTSI_7_86986848	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235793617					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372032947	MGP_WTSI_7_86986848	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79491710 () rs orientation: forward

Symbol	Name	Function Class
Anpep	alanyl aminopeptidase, membrane	within coordinates
Gm71751	predicted gene, 71751	457 bp upstream
Rr649722	regulatory region 649722	380 bp proximal
Rr649723	regulatory region 649723	472 bp proximal
Tssr67371	transcription start site region 67371	123 bp downstream
Tssr67372	transcription start site region 67372	55 bp upstream
Tssr67373	transcription start site region 67373	515 bp upstream
Tssr67374	transcription start site region 67374	561 bp upstream
Tssr67375	transcription start site region 67375	595 bp upstream
Tssr73161	transcription start site region 73161	1045 bp upstream
Tssr73162	transcription start site region 73162	987 bp upstream
Tssr73163	transcription start site region 73163	966 bp upstream
Tssr73164	transcription start site region 73164	803 bp upstream
Tssr73165	transcription start site region 73165	257 bp upstream
Tssr73166	transcription start site region 73166	225 bp upstream
Tssr73167	transcription start site region 73167	23 bp upstream
Tssr73168	transcription start site region 73168	2 bp upstream
Tssr73169	transcription start site region 73169	12 bp downstream
Tssr73170	transcription start site region 73170	43 bp downstream
Tssr73171	transcription start site region 73171	114 bp downstream
Tssr73172	transcription start site region 73172	142 bp downstream
Tssr73173	transcription start site region 73173	158 bp downstream
Tssr73174	transcription start site region 73174	246 bp downstream
Tssr73175	transcription start site region 73175	267 bp downstream
Tssr73176	transcription start site region 73176	325 bp downstream
Tssr73177	transcription start site region 73177	355 bp downstream
Tssr73178	transcription start site region 73178	381 bp downstream
Tssr73179	transcription start site region 73179	445 bp downstream
Tssr73180	transcription start site region 73180	512 bp downstream
Tssr73181	transcription start site region 73181	595 bp downstream
Tssr73182	transcription start site region 73182	614 bp downstream
Tssr73183	transcription start site region 73183	653 bp downstream
Tssr73184	transcription start site region 73184	1313 bp downstream