rs235794119 SNP Detail

Summary

• ID
  rs235794119
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105290192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATCGGATG ACAGAACTGT
  GTTTCCAGCG CTGTGTGCCC AGCCTGCACC ACCGAGCTCT GGACGCTGAG GAGGTGGAGA
  CAGTGTGGGG GTCCCAGAGT TGACAACGTG ACGTGACACC CTCCCCCAGC CCCCCATCTT
  CTCCCTCTTT CTTGACCTCA CTCCTAGGCT GGGGACCGGG AAGGAAGGAG GCGGGCTTGA
  Y
  TGGACCCCTT TTAGTTTCTA CTTCCCTCCG TCTTCCTTCC AGGAGGCCTG CCTGCACAGC
  TGTGCTGGGA AACTCATCCA TTCTAACCAC CGCCTCATGG CCGCTTACGT GCACCTCATG
  CCCGCCCTGG TCCAGCGCCG CATCGCGGAC TACGAGGCTG CCTCGGCCGC GCCAGGTATT
  CCTGCAGAAC AGACCAGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322370121	CHEV_7_112789499	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235794119					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105290192 () rs orientation: forward

Symbol	Name	Function Class
Arfip2	ARF interacting protein 2	569 bp upstream
Cpgi19541	CpG island 19541	within coordinates
Gm22504	predicted gene, 22504	1353 bp downstream
Gm45799	predicted gene 45799	within coordinates
Rr400513	regulatory region 400513	437 bp downstream
Rr652793	regulatory region 652793	919 bp distal
Rr652794	regulatory region 652794	680 bp distal
Rr652795	regulatory region 652795	385 bp distal
Timm10b	translocase of inner mitochondrial membrane 10B	within coordinates
Tssr2358	transcription start site region 2358	564 bp downstream
Tssr68382	transcription start site region 68382	471 bp downstream
Tssr68383	transcription start site region 68383	399 bp downstream
Tssr68384	transcription start site region 68384	176 bp downstream
Tssr68385	transcription start site region 68385	11 bp upstream
Tssr68386	transcription start site region 68386	67 bp upstream
Tssr68387	transcription start site region 68387	1352 bp upstream
Tssr68388	transcription start site region 68388	1630 bp upstream
Tssr74083	transcription start site region 74083	615 bp upstream