rs235794606 SNP Detail

Summary

• ID
  rs235794606
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10612383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATGAATTC TAGACTAGCC
  TGGGCTACAG AGGGAGAACT TGTCACTGCT CCTTAAAATT AATTTAAGCC GGGCGTGGTG
  GCACTCGCCT TTAGTCCCAG CACTTGAGAG GCAGAGGCAG GTGAATTTCT GAGTTCAAGG
  CCAGCCTGGC CTACAGAGTG AGTTCCAGGA CAGCCAGGGC TACACAGAGA AACCTTGTCT
  Y
  GAAGAAACAA GGAAAAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGATCTGGG TTGCAGACAC TGGTCAATGA GAAGAAATAT TGAACTGATG
  CAAGATTAGA AACCACAAAT AAAAGAAAAA CAAGTGTCCT GGTTTTGTTT TGTTTTGTTT
  TGTTTTGTTT TGTTTTGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325524309	CHEV_18_10612381	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235794606					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10612383 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9702	CpG island 9702	1735 bp distal
Rr533780	regulatory region 533780	1541 bp distal
Rr533782	regulatory region 533782	1941 bp distal