rs235811040 SNP Detail

Summary

• ID
  rs235811040
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:113617381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGGGGTGC ATCCTCTCAG
  AGGCCAGGGG AGAGGGGAGG GGCGAGCAGG ATGGGGAGCA ACATTTGGAA TGTAAATAAA
  TAAAATAATT TAAGAAAATA AATACAATCA CCCGAAGAGC TTCTGGGCGT ACACGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGCGTGC
  R
  CGCGAGAGCA CACTCGCACA CGCTCGGGGT GGGGTGCATG TTGAGGTAGA AAGGCCCGCC
  CACCATGGGC AGCACCATTC TCTACGTCAG CTCTAGGCTG TAGAGGGAAA AGGAGCTGAG
  CCCCAGCATC CACTGTTCGC TCTTCTTGAC TGTGGATTGG ATGCAACCAG CTGCTCCAAG
  CTCCTGTGTT TGCCAGAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384784536	MGP_WTSI_11_113587869	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	G	G	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	G	A	G	A	G	G	G	A	G	A	G	G	A	G	A	G	G	G	G	G	G	A	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235811040					SNP	A	A	A	A	G	G	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	G	A	G	A	G	G	G	A	G	A	G	G	A	G	A	G	G	G	G	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384784536	MGP_WTSI_11_113587869	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:113617381 () rs orientation: forward

Symbol	Name	Function Class
Cdc42ep4	CDC42 effector protein 4	295 bp downstream
Rr459435	regulatory region 459435	464 bp distal
Rr459436	regulatory region 459436	651 bp proximal