rs235812036 SNP Detail

Summary

• ID
  rs235812036
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:93870797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTTCCAA ATTATGCTTC
  CACGGGCAGT TTTTAGATAT CTCAATACTT CACATTCTGT ACCGTACCTC ACCCTCCCAT
  TATACACCAC GGGGGATTTC TTCTCTTTCT CTTGTATGAA TTCCCTGAAA TCTAGTTGGC
  TGAGGGAAAG TATGGCATAC ATATTCAATA CATACACATA CACGTTCCAG GGTGTGGGTA
  Y
  TGACCTGTCT GATGGGGTAA AAATGGCACT AAAGCCATTA ACTAGGCTTT ATTTTTTAAA
  TTCAAGATGG CAGAGACATC TTAAAATAGT CCAACACAAA AGCATTCACA TCCAGACCAG
  AGCTTCCATT CAGAACTGGC TACACTTAGC GCAACAGCAA GGACAAAAGA ATGGAACCTA
  GGTGCTGAGA CGCCAGAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381314835	MGP_WTSI_10_93497680	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235812036					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381314835	MGP_WTSI_10_93497680	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:93870797 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2121	CpG island 2121	371 bp proximal
Fgd6	FYVE, RhoGEF and PH domain containing 6	1066 bp upstream
Gm49628	predicted gene, 49628	within coordinates
Rr402165	regulatory region 402165	780 bp upstream
Tssr3327	transcription start site region 3327	1429 bp upstream
Tssr95293	transcription start site region 95293	514 bp upstream
Tssr95294	transcription start site region 95294	1109 bp upstream
Tssr95295	transcription start site region 95295	1122 bp upstream
Tssr98985	transcription start site region 98985	793 bp downstream
Tssr98986	transcription start site region 98986	836 bp downstream
Tssr98987	transcription start site region 98987	854 bp downstream
Tssr98988	transcription start site region 98988	1788 bp downstream
Vezt	vezatin, adherens junctions transmembrane protein	within coordinates