rs235817890 SNP Detail

Summary

• ID
  rs235817890
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99758071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATCAGAG AGAAGAGCTG
  ACCCTGCAAA GTTTTCAACT GATCATGCCA GTCCCAGCCC CCAGGCAGCC CCCAGGGGGC
  CGAAGGGTAG GAAGGGCAGC GGGGATGAGA GGGCGCTCGG CCTGGAGTCT GTGGGCACCA
  GAGATTGGGG CCCAAGTACC AGAGTCTTGG GATTAAGTGG CTAGGTAATT TTCTGGCAAG
  R
  GCAGGAGATT CCTCCTTCGC TCCCTCTTCA CCTTCGCCTT CTCTCCTTCC CGTCTCTCCC
  CTGGCTTCTC TGGCCGTGGC TCCCCCCCTC CCGTGGTTTC CGGGCGCTGC TTTGCCTAGC
  ACTGCACCTG GCCGAGAATG CGGGGAGGCT GGTGAACTGC AGCCAAAAGC GGCGAAGTTC
  AAAGGCGAGG TGGGCCGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323137447	CHEV_9_99776437	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235817890					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99758071 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22205	CpG island 22205	within coordinates
Gm16004	predicted gene 16004	within coordinates
Gm67910	predicted gene, 67910	within coordinates
Rr685462	regulatory region 685462	1876 bp distal
Rr685463	regulatory region 685463	290 bp distal
Rr685464	regulatory region 685464	within coordinates
Rr685465	regulatory region 685465	142 bp proximal
Rr685466	regulatory region 685466	1765 bp proximal
Sox14	SRY (sex determining region Y)-box 14	within coordinates
Tssr91083	transcription start site region 91083	129 bp downstream
Tssr91084	transcription start site region 91084	180 bp downstream