rs235819854 SNP Detail

Summary

• ID
  rs235819854
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105436445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACACTGTCC TGCCCTCACC CACCAACCCC
  CCGCCCCCCA ACCGCACACT CAAGCACCAC CACACACTCC CACTCGATGA CACCCGCACA
  CAAAGACccc ccggccctgc ccccatgctc acgttcacgc tcgccctctc ccgcaggccc
  Y
  ggcccccccc tcccccattg tctcggctca gaacaaagcc cccggctccg ccaccgccgc
  cgccGCAGTC GGGGAGGCCG ACCGACCCCG CGGGTGCGGC CGGACGGGCC GGTCACTGAC
  CTCGATGCGG TGCGGGCTCC CTCGCCCAGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322370579	CHEV_7_112935752	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235819854					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105436445 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19545	CpG island 19545	within coordinates
Dchs1	dachsous cadherin related 1	within coordinates
Gm57787	predicted gene, 57787	1589 bp downstream
Rr652815	regulatory region 652815	within coordinates
Rr652816	regulatory region 652816	406 bp proximal
Tssr74105	transcription start site region 74105	245 bp downstream
Tssr74106	transcription start site region 74106	268 bp downstream
Tssr74107	transcription start site region 74107	306 bp downstream
Tssr74108	transcription start site region 74108	329 bp downstream