rs235821399 SNP Detail

Summary

• ID
  rs235821399
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:17815525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACTCCTGTC TCAATTTCAA AACAAATATC
  GAGATTTTCA CTTCACTAAT TCTTTATGCT TTTCAGTAAC TGTTTATTTT GCGCATTCTG
  CTCCCCGGAG AAGCTGTCAC ACAGGACAGT TAAGTATCAT TCACTCTTAC AAAAGCCAAA
  R
  CCAAAAGTCT GTCGCCTGTT GACTTGGGAG ATCAGCCATT CTGATACTCA GCAGCAACAT
  CACAGGAGGG TGAAATCCCT GCTTAGAGCA TGGAAAGATA TTTCTATGAA TATCTACAGT
  ACTAGAGAAC GGATAAGTGT GGGTTCCAAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325730792	CHEV_19_17912651	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235821399					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:17815525 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10665	CpG island 10665	1891 bp distal
Cpgi10666	CpG island 10666	296 bp distal
Pcsk5	proprotein convertase subtilisin/kexin type 5	529 bp upstream
Rr544885	regulatory region 544885	540 bp distal
Rr544886	regulatory region 544886	564 bp distal
Rr544887	regulatory region 544887	39 bp distal
Tssr158513	transcription start site region 158513	519 bp upstream