rs235826234 SNP Detail

Summary

• ID
  rs235826234
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46991736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCAGCCC CTCCCGCGCG
  GCCCCAGCCG TAGGCAATGG GCGTCGCCTG TCCCTTCAAT TTTCCTCATC CCCCCAACCC
  ATCCCAGGCT ACCTGCCAGG CCGGGCCGGG GTGGGGCCGC GGGTCCTCGC GCTGCCAGCA
  GCCTAGAACC CGTTGCCCGC CAACCGATTC CTCGGTCCCC AACGAGATAA ACACTGCCAG
  R
  CTTCGTCCTT CCGGCGGGCA GCGGGACGCG CACGTGCAGT GAGAATTGCC GGCCCGACAG
  CTTCAGGGAC TTGTAGTCCA CGAATTACCC CAGGGCCGAA AGATGGGGAG CGGGTGGGCG
  GGGCCGGTTT GTGCGCATGC GCAGAACACC AGTTCACGTC GCACGCCTGA GGGTCACTGG
  GTAATGTAGT TCTTTGTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss398326251	MGP_WTSI_17_46817759	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs235826234					SNP	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398326251	MGP_WTSI_17_46817759	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46991736 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9239	CpG island 9239	within coordinates
Klhdc3	kelch domain containing 3	within coordinates
Mea1	male enhanced antigen 1	within coordinates
Rr405317	regulatory region 405317	within coordinates
Rr527794	regulatory region 527794	1461 bp distal
Rr527795	regulatory region 527795	within coordinates
Tssr5136	transcription start site region 5136	29 bp upstream
Tssr5137	transcription start site region 5137	125 bp downstream
Tssr144871	transcription start site region 144871	1983 bp downstream
Tssr144872	transcription start site region 144872	332 bp downstream
Tssr144873	transcription start site region 144873	170 bp upstream
Tssr144874	transcription start site region 144874	228 bp upstream
Tssr144875	transcription start site region 144875	1166 bp upstream
Tssr144876	transcription start site region 144876	1225 bp upstream
Tssr148367	transcription start site region 148367	76 bp upstream
Tssr148368	transcription start site region 148368	54 bp upstream
Tssr148369	transcription start site region 148369	35 bp upstream
Tssr148370	transcription start site region 148370	within coordinates
Tssr148371	transcription start site region 148371	37 bp downstream
Tssr148372	transcription start site region 148372	60 bp downstream
Tssr148373	transcription start site region 148373	1091 bp downstream
Tssr148374	transcription start site region 148374	1103 bp downstream