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rs235828617 SNP Detail
Summary
  • ID
    rs235828617
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr15:97273195 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCTGTATAGC CCTGGCTATC
    CTGGAGCTCA CTTTGTAGAC CAGGCTGGCC TCGAACTCAG AAATCCGCCC GTCTCTGCCT
    CCCGAGTGCT GGGATTAAAG GCGTGTGCCA CCACGCCCGG CAATATAATT TTTTTTTAAC
    CCAAAGAAAG GAAACCTAAG CCCCAATCTT ATCTAATTCA TCAGAAGACT TCTTGCTATC
    W
    ATAGCAGGCC AGCCAGTTCT GGCTTTTGCC AGCTGAGCAG TCTTGGGCTA TTTTGCATAG
    CTTCTGTTGA TTTCTCTGTA AGTAGACTAA GTTTTCTCTG TAAGTAGACT AAGTTTTCAC
    CTCACCGGCC TGTGAGGACC CACTGTGAAT GTCCGATGTG AGGAGGCATA GGGTGATGGA
    TGGGCAAGCC AGGGCACATC                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss395111096 MGP_WTSI_15_97205745 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs235828617 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss395111096 MGP_WTSI_15_97205745 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:97273195 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi7620 CpG island 7620 1526 bp proximal
Pced1b PC-esterase domain containing 1B within coordinates
Rr391162 regulatory region 391162 within coordinates
Rr404594 regulatory region 404594 1895 bp downstream
Tssr132858 transcription start site region 132858 1930 bp downstream
Tssr132859 transcription start site region 132859 1912 bp downstream
Tssr132860 transcription start site region 132860 1892 bp downstream
Tssr132861 transcription start site region 132861 1366 bp downstream
Tssr132862 transcription start site region 132862 1326 bp downstream
Tssr132863 transcription start site region 132863 1278 bp downstream
Tssr132864 transcription start site region 132864 1255 bp downstream
Tssr132865 transcription start site region 132865 1108 bp downstream
Tssr132866 transcription start site region 132866 1374 bp upstream
Tssr132867 transcription start site region 132867 1844 bp upstream
Tssr132868 transcription start site region 132868 1866 bp upstream
Tssr136113 transcription start site region 136113 1419 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory