rs235865513 SNP Detail

Summary

• ID
  rs235865513
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:42310810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTGAGCC TGGAGCTGGA
  GGGAAGGGGG CAGCCTTGGG TCCCCTTGGG CTAGGAAAGG GATGAGGGAA AATTGTGGTG
  TGTAGATAGG TGATTTGGTG GCTCAAACGG TCTCGGGGTT CCTTCATTGT GCCTGTCTTC
  TGTGAACCAC TGGGTTTGGA CGCAGAGGTG CAGCTTCAAC TGTCCAGAGC AGAGCGGCAG
  K
  GGTGCAGCTC CGTTGGGCCA CAGTAGTGGG CGGCGAGCTC CTGCTGGTGA GGTAAGGAGT
  GGTGGGTGGC AAGGACTGTG AATGCACGTG TCTCGTGTGT GTCTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGC GCGCGCGCGC GCGCGCGGTG CGCGTGCGTC
  CGCGAGGCGT GGGGGGCCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383143973	MGP_WTSI_11_42233485	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235865513					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383143973	MGP_WTSI_11_42233485	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:42310810 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2743	CpG island 2743			1130 bp distal
Cpgi2744	CpG island 2744			within coordinates
Gabrb2	gamma-aminobutyric acid type A receptor subunit beta 2			mRNA-UTR
				Noncoding-Transcript-Variant
Gm34591	predicted gene, 34591			within coordinates
Rr445405	regulatory region 445405			216 bp distal
Rr445406	regulatory region 445406			877 bp proximal
Tssr100974	transcription start site region 100974			264 bp downstream
Tssr100975	transcription start site region 100975			198 bp downstream
Tssr100976	transcription start site region 100976			28 bp downstream
Tssr100977	transcription start site region 100977			454 bp upstream
Tssr100978	transcription start site region 100978			775 bp upstream
Tssr100979	transcription start site region 100979			846 bp upstream
Tssr100980	transcription start site region 100980			1250 bp upstream
Tssr100981	transcription start site region 100981			1275 bp upstream
Tssr100982	transcription start site region 100982			1302 bp upstream
Tssr100983	transcription start site region 100983			1339 bp upstream