rs235871164 SNP Detail

Summary

• ID
  rs235871164
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31148574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGACGTCGGC ACTGGGCGGG
  GGGAGGGTGG CAACACTGGG AGCGGGGAGC ACGGGGGCAG GTGGTGGCGC TGCGGGGGGG
  GGGGCGGTGG CAGCGCGGGG GCGTCTGCGC GGCGGGCTCA GCCCGGGGGT CGCGGCGGGG
  AGCCACCCGC AGGCCACCTC CGGGGCGGGG CCGGGCGGCC AGCTGCGGCC GCGGGGGTTG
  R
  GGGGGGCTGC TGGCCGAGCC TGACCTCGGG CGCGGCCAGC TGCCGGGGTC GCGCACAGTG
  CAGCCCGCCG CGCCCTGCCC CCTCTCCCCC TTCTCACCCC CCCCGCCTCG CAGCGCGGCG
  GCCCGGCGGC CAGGGCGCCC CCAGGTCTGG CCCGTCGCCA CACGGCGGCG GGCGTGGCGA
  GGGCGGCCCC AGACAGCCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CZECHII/EiJ	DBA/2J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	RIIIS/J	SM/J	SWR/J	WSB/EiJ
ss357433258	MGP_WTSI_3_30993347	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CZECHII/EiJ	DBA/2J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	RIIIS/J	SM/J	SWR/J	WSB/EiJ
rs235871164					SNP	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357433258	MGP_WTSI_3_30993347	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31148574 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13048	CpG island 13048	within coordinates
Gm65753	predicted gene, 65753	within coordinates
Gm65762	predicted gene, 65762	424 bp downstream
Rr397631	regulatory region 397631	608 bp downstream
Rr574879	regulatory region 574879	518 bp distal
Rr574880	regulatory region 574880	127 bp distal
Rr574881	regulatory region 574881	143 bp proximal
Rr574882	regulatory region 574882	711 bp proximal
Rr574883	regulatory region 574883	742 bp proximal
Rr574884	regulatory region 574884	1406 bp proximal
Skil	SKI-like	685 bp upstream
Tssr28706	transcription start site region 28706	518 bp downstream
Tssr28707	transcription start site region 28707	375 bp downstream
Tssr28708	transcription start site region 28708	241 bp upstream
Tssr28709	transcription start site region 28709	269 bp upstream
Tssr28710	transcription start site region 28710	294 bp upstream
Tssr28711	transcription start site region 28711	512 bp upstream
Tssr28712	transcription start site region 28712	536 bp upstream
Tssr28713	transcription start site region 28713	627 bp upstream
Tssr28714	transcription start site region 28714	1472 bp upstream
Tssr28715	transcription start site region 28715	1949 bp upstream
Tssr32911	transcription start site region 32911	1402 bp downstream