rs235872139 SNP Detail

Summary

• ID
  rs235872139
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:95239886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGCACAAA TTATAGCACA ACACCTATTG
  AGAATGAAGA ACTATGTTTG TATCAACCAG AGATCTCTTG TTGGCCAAGA GGTTGTTATG
  GAGGCTTTTT TGACCCCTCG GGAAAATACT ATAGAGTCAA TTACATTATA ATTAAAAGAT
  R
  CATTGATTAT CTGCTAGCAG GGCAATAGTC TTAAAGCCCA AGCTCATGCA TGTTGTGAGG
  AGTGGTATGG GGAAAGGCTT TTTAAAGACA AAACCACAAG ATCTTCAATA TTTATGCAAA
  TAACCAAATA CTGGTCTTTT CTGCCAAGCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319848292	CHEV_1_97208738	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235872139					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:95239886 () rs orientation: forward

Symbol	Name	Function Class
Cpgi614	CpG island 614	1267 bp proximal
Fam174a	family with sequence similarity 174, member A	1467 bp upstream
Rr396183	regulatory region 396183	1200 bp upstream
Tssr8214	transcription start site region 8214	1446 bp upstream
Tssr8215	transcription start site region 8215	1517 bp upstream
Tssr8216	transcription start site region 8216	1926 bp upstream
Tssr8217	transcription start site region 8217	1945 bp upstream
Tssr8218	transcription start site region 8218	1963 bp upstream
Tssr8219	transcription start site region 8219	1989 bp upstream
Tssr13058	transcription start site region 13058	1894 bp downstream