rs235874264 SNP Detail

Summary

• ID
  rs235874264
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116508484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTCAAAG GTTTATCCCA
  GTCCTCCCTA CAGCACTAAT GATTTCCTTG CTCATTCCAA CTCTGAGGAA ACCGAGGTCC
  AGAAACACGT TATCTGAGAA CAGAATAGGA GGAAGTGCTC AAACGCGAAA CTAAATCGCA
  TCCCTCGACG TGCTGGCGCC ATTCGCTCAA TCCTGGCCCT GACCTGTGGT ACTGAAGGAC
  Y
  CTCGCCTTTA ACTCAGGAGA AAAAGACGAG TCAGCAGCAG GAAGAACTCA CCTTGGCAGT
  GAGCACAGGC TGTGGAAAAG ACAAAGTGGC CCGAATTCAG CTCTGCACTC CAGTACTGAG
  GCAACAGGGC CCGACTTAAG TCCGGCGGAG AAGCGGCAGC CCCACCCCAG GGAGGAGCGA
  GGGCCCGGCT CCCAGAACTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362953540	MGP_WTSI_4_116323892	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235874264					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362953540	MGP_WTSI_4_116323892	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116508484 () rs orientation: forward

Symbol	Name	Function Class
Akr1a1	aldo-keto reductase family 1, member A1	within coordinates
Cpgi14637	CpG island 14637	within coordinates
Tssr38538	transcription start site region 38538	1438 bp downstream
Tssr38539	transcription start site region 38539	221 bp upstream
Tssr42908	transcription start site region 42908	800 bp upstream
Tssr42909	transcription start site region 42909	102 bp downstream
Tssr42910	transcription start site region 42910	132 bp downstream
Tssr42911	transcription start site region 42911	148 bp downstream
Tssr42912	transcription start site region 42912	254 bp downstream
Tssr42913	transcription start site region 42913	279 bp downstream
Tssr42914	transcription start site region 42914	309 bp downstream
Tssr42915	transcription start site region 42915	357 bp downstream
Tssr42916	transcription start site region 42916	390 bp downstream