rs235878363 SNP Detail

Summary

• ID
  rs235878363
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191710211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGCACAGC CTCTGAGGTC CAATAAGACA CTAGGGAGGG
  AACCTGGGTG GTGGGGGAGG GTTCAGTGGA GATGGTTCTC ATTATGACAT CGGGATGAAG
  R
  GGCACTTCTT GGAGATTGTC CACCATAGTC AGACCTAAGT ATCTGTACCT CTGCCTCAAT
  ATGAAGAAAA CTGACTGAGA TTCACCCGTT CACCCACCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320196690	CHEV_1_193802131	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235878363					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191710211 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm70525	predicted gene, 70525			1909 bp downstream
Gm70534	predicted gene, 70534			66 bp upstream
Rd3	retinal degeneration 3			Intron
				mRNA-UTR
Rr426276	regulatory region 426276			867 bp distal
Rr426277	regulatory region 426277			685 bp distal
Rr426278	regulatory region 426278			1037 bp proximal
Tssr10797	transcription start site region 10797			861 bp downstream
Tssr10798	transcription start site region 10798			850 bp downstream
Tssr10799	transcription start site region 10799			805 bp downstream
Tssr10800	transcription start site region 10800			within coordinates
Tssr10801	transcription start site region 10801			34 bp upstream