rs235881620 SNP Detail

Summary

• ID
  rs235881620
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:128655711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTT TTTTTTTTTT
  TTTTTTTTTT GGCCAGGGTT GCTTTCTGAC TCTGGAGTGC AGCAATTTGG CTAAACTGTC
  TGGCCAGCGA GCCCTAGGGA TCTTCCTGCC TCTGACTCTT CAGTGCTGGG ATTATAGGCA
  CTCATGGTTG TACATGGCCA CATCTGGCTT TTACATATGT GCAAGGGATT GAACTCAAGT
  Y
  CTTATCCTTT ATGGCAAGCA CTTGACTAAA CCATTTCCCC AACCCCTAGT ACCTTTTCCC
  TGGTTAGTAG AGCCATTTCC AACCCAGCAT CTCCTTCACA CCCAGACTCA CAGTACAATA
  GGAGAGATGC TGAGGAACTT TCGCGAGGAG GTAAACTGTA GTCCATAGTC CATCTGCTCC
  CAATGTGTCA AAAGCCGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323536204	CHEV_10_128256898	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235881620					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128655711 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2421	CpG island 2421			1612 bp proximal
Dnajc14	DnaJ heat shock protein family (Hsp40) member C14			394 bp downstream
Ormdl2	ORM1-like 2 (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant
Rr402366	regulatory region 402366			1679 bp upstream
Rr441331	regulatory region 441331			1187 bp proximal
Rr441332	regulatory region 441332			1739 bp proximal
Sarnp	SAP domain containing ribonucleoprotein			Intron
				Noncoding-Transcript-Variant
Tssr96457	transcription start site region 96457			168 bp downstream
Tssr96458	transcription start site region 96458			1884 bp upstream
Tssr96459	transcription start site region 96459			1903 bp upstream
Tssr96460	transcription start site region 96460			1942 bp upstream
Tssr99967	transcription start site region 99967			1734 bp downstream