rs235890518 SNP Detail

Summary

• ID
  rs235890518
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:34849258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTGAAGG AAGGTGTGAG
  GTTCAAGAAG GCACAGCCTG TGGTAGAGCA GTGGGCTGTG CTCTTCCAAC ATGGAAGAGG
  TAAGAATGAG GCAGCACCGT GAAGTTTCAG AGCCTGGGAT GTGTGTTAGA GCATCAGGTT
  CTTCAGGTTG TCAAATGACA AAGTGACCTC TGTATACCTT TCCATCCAAC CAAACTGCCC
  Y
  GTGCCTAGAC AGATCTGGAA TGGGATCACA GATCCACCAC ATGGTCGTAT TTATTTATTT
  ATTTATAGAT AGGATCTCAC TCTGTAGTCC TGGCTGGCTT AGAACTTGCT ATGTAGACCA
  GGTTAGCCTT AAACTCACAG AGATCTGCCT GCTTCTTCTT CCAAGTGCTT GGCATTAAGT
  TGAGCACCAC CATGCGCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353605770	MGP_WTSI_2_34814766	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235890518					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353605770	MGP_WTSI_2_34814766	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34849258 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm52552	predicted gene, 52552			within coordinates
Gm74856	predicted gene, 74856			611 bp downstream
Rr396906	regulatory region 396906			862 bp downstream
Rr555565	regulatory region 555565			949 bp distal
Rr555566	regulatory region 555566			767 bp distal
Rr555567	regulatory region 555567			175 bp distal
Rr555568	regulatory region 555568			1248 bp proximal
Traf1	TNF receptor-associated factor 1			Intron
				Noncoding-Transcript-Variant
Tssr476	transcription start site region 476			929 bp downstream
Tssr17437	transcription start site region 17437			911 bp downstream
Tssr17438	transcription start site region 17438			891 bp downstream
Tssr17439	transcription start site region 17439			377 bp downstream
Tssr17440	transcription start site region 17440			1756 bp upstream
Tssr23667	transcription start site region 23667			1158 bp upstream
Tssr23668	transcription start site region 23668			1133 bp upstream
Tssr23669	transcription start site region 23669			1105 bp upstream
Tssr23670	transcription start site region 23670			1073 bp upstream
Tssr23671	transcription start site region 23671			614 bp upstream
Tssr23672	transcription start site region 23672			503 bp upstream