rs235891432 SNP Detail

Summary

• ID
  rs235891432
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:120880497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGC AAGTTCATAA GCTTGGGAAG
  R
  CTAGAAGGCC GGCCCAAAGC ACAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323870965	CHEV_11_120850985	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235891432					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:120880497 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4335	CpG island 4335	470 bp proximal
Csnk1d	casein kinase 1, delta	within coordinates
Gm53204	predicted gene, 53204	1772 bp upstream
Gm57327	predicted gene, 57327	1504 bp upstream
Rr403207	regulatory region 403207	1528 bp upstream
Rr461861	regulatory region 461861	1856 bp distal
Rr461862	regulatory region 461862	779 bp distal
Rr461863	regulatory region 461863	460 bp distal
Rr461864	regulatory region 461864	within coordinates
Rr461865	regulatory region 461865	1236 bp proximal
Rr461866	regulatory region 461866	1388 bp proximal
Rr461867	regulatory region 461867	1411 bp proximal
Rr461868	regulatory region 461868	1515 bp proximal
Rr461869	regulatory region 461869	1649 bp proximal
Rr461870	regulatory region 461870	1764 bp proximal
Tssr106388	transcription start site region 106388	887 bp upstream
Tssr106389	transcription start site region 106389	1711 bp upstream
Tssr106390	transcription start site region 106390	1741 bp upstream
Tssr112430	transcription start site region 112430	1349 bp downstream
Tssr112431	transcription start site region 112431	1368 bp downstream
Tssr112432	transcription start site region 112432	1407 bp downstream
Tssr112433	transcription start site region 112433	1432 bp downstream
Tssr112434	transcription start site region 112434	1589 bp downstream
Tssr112435	transcription start site region 112435	1634 bp downstream