rs235891459 SNP Detail

Summary

• ID
  rs235891459
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:121574455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCACTCAA ACACACAGGC
  ACACACTCAT GTGAACACAT GCCCCTACAA CACACACACA CACACACACA CACACACACA
  CACACACACA CACACATTCC TGCTTGTTCC AGCCCCACTC ACTCTGGCCC AAAGATTTAT
  TTATTTATTA TATGTAAGTA CACTGTAGCT GTCTTCACAC ACACCAGAAG AGGGCGTCTG
  R
  TCTCATTACA GATGGTTGTG AGCCACCATG TGGTTGCCGG GATTTGAACT CAGGACCTCC
  AGAAGAACAG TCAGTGCTCT TAACTGCTGA GCCATCTCTC CAGCCCACAT AACAATATTT
  GAAACTTATT TTGGGTCTGG GTATCATTGA CACACAGTAG GCAGAGGCCT CGGACTATTC
  AAGACCAACT CTCTCTACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323514830	CHEV_10_121175606	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235891459					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121574455 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2295	CpG island 2295	853 bp proximal
Kics2	KICSTOR subunit 2	1380 bp upstream
Rr440270	regulatory region 440270	897 bp proximal
Tssr96047	transcription start site region 96047	1365 bp upstream
Tssr99640	transcription start site region 99640	1761 bp downstream