rs235893042 SNP Detail

Summary

• ID
  rs235893042
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:51445048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAACTCCA GATATCACCT
  TAAATCTGGT TTTGTCAGGC ACTTAATACT GGCTTTCCAA TAGCTAAGTA CAAAAACTTA
  TCAAGATGTT CATAAATTAG GTCATACTAT CCAGGACCTA TGACTGCACA ACGAAATGAA
  AAAGCAAAAT TATAAAACAA ATCCGTTATT TTACTGTATA GCCTAAATTT GTAAGTTTCT
  M
  CAAAATGTGC TCAAAAAGCC AATGTTTACA ATTTTTAGGT TTTGAAATGT TTAATAAAAA
  CGACCAAAAT TGTTTTAAAT AGTCAAAATA GTTACAAAAG CCTTAATCAG GACTCCAAAT
  AGTGTTTCTG GTAGCTCTAC TAAAATGTCA GTAAATTGGC TTTCCTTAAA CTAAGTTGCA
  AGTATTAAAT ACACCTTGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368292317	MGP_WTSI_6_51418067	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235893042					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368292317	MGP_WTSI_6_51418067	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:51445048 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17402	CpG island 17402	777 bp proximal
Gm67572	predicted gene, 67572	1362 bp upstream
Hnrnpa2b1	heterogeneous nuclear ribonucleoprotein A2/B1	within coordinates
Rr379347	regulatory region 379347	247 bp upstream
Rr630212	regulatory region 630212	71 bp distal
Rr630213	regulatory region 630213	872 bp proximal
Rr630214	regulatory region 630214	1694 bp proximal
Tssr56443	transcription start site region 56443	1360 bp upstream
Tssr60939	transcription start site region 60939	1843 bp upstream
Tssr60940	transcription start site region 60940	1664 bp upstream
Tssr60941	transcription start site region 60941	1380 bp upstream
Tssr60942	transcription start site region 60942	1233 bp upstream
Tssr60943	transcription start site region 60943	1123 bp upstream
Tssr60944	transcription start site region 60944	1076 bp upstream
Tssr60945	transcription start site region 60945	247 bp upstream
Tssr60946	transcription start site region 60946	383 bp downstream
Tssr60947	transcription start site region 60947	1768 bp downstream
Tssr60948	transcription start site region 60948	1801 bp downstream