rs235897828 SNP Detail

Summary

• ID
  rs235897828
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126072639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTAAGCC CAATCCTGCT
  GCCTTTGTCA CCCCTCTCCC TGTTGTGGGA CCCAGGAAAG GGCCTTGGAG CATCTTACCC
  CACAGGGGAC TCTTAAGATC ACTGCCATCC CTTCTCTAAG ACAAAACCTT CCCTAACTAT
  CACACATTTT AAGTGTGCCA TTCCAGAGGG CTCTACAAGG TCATTTTACC TTTCCTTAGA
  Y
  AACTTACTAA CCTCTTACAG ATGAGGAAAC GGAGATTCAA ACAGAGATTC AAACAAGTTC
  CAGAACTCAG AGTCTACCGC ATTTCCCACT GCACAGTTCT AGTCTCCAGG GATATGCTGG
  ACCAGCCTCG ACCACAGCTC CCACTGCTCT GTTCTCAGGG GACCAAAGGG TGCAGGGATT
  ACACCCTTTA AAGACCTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373069183	MGP_WTSI_7_133616981	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235897828					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373069183	MGP_WTSI_7_133616981	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126072639 () rs orientation: forward

Symbol	Name	Function Class
C530001K22Rik	RIKEN cDNA C530001K22 gene	1728 bp upstream
Cpgi19695	CpG island 19695	581 bp distal
Cpgi19696	CpG island 19696	1013 bp proximal
Gm73863	predicted gene, 73863	1647 bp upstream
Rr368432	regulatory region 368432	1848 bp upstream
Sh2b1	SH2B adaptor protein 1	within coordinates
Tssr74717	transcription start site region 74717	1978 bp upstream
Tssr74718	transcription start site region 74718	1072 bp upstream
Tssr74719	transcription start site region 74719	1030 bp upstream
Tssr74720	transcription start site region 74720	1467 bp downstream
Tssr74721	transcription start site region 74721	1588 bp downstream
Tssr74722	transcription start site region 74722	1615 bp downstream