rs235901252 SNP Detail

Summary

• ID
  rs235901252
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:9884061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAGGATTC AAGCCAGAAC
  GTTTTTCAGT TTATATCAGC TTAGGGGCTA TGTGCATGTA AAACAGATTA GAAAAGTTTC
  ATGGCGAAGT AACTGAAGAT TTGCCTCCGA ACCAGCTTTC CGGGAGGCTG CTGAATCGCG
  CGGAGGACCT GGGCTTTGAT TCGGACGCCC GCGTTATTGT TATGGTCTCT GCTTGCTTTC
  Y
  CAAACCTCTC CAGAACGAAC AGCGTCAGCT GTTGCAGCTG TCTTTTTCGG ATCTAATGAT
  ATCATCAATG TGTGCTTTTG ACCTTAGTGA CAACGCGATG CATAAAAAGC TGGCTTAGCG
  AGACCTAGGC TCACTGGTCC CCGAAGTACC GTGTACAACT AACTTGATCT TTGCTGCGAT
  AGCCTAACTT TTCTCTTCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353056036	MGP_WTSI_2_9800877	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	T	T	C	C	C	C	T	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235901252					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	T	T	C	C	C	C	T	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353056036	MGP_WTSI_2_9800877	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:9884061 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11183	CpG island 11183			1532 bp distal
Cpgi11184	CpG island 11184			within coordinates
Cpgi11185	CpG island 11185			1821 bp proximal
Gata3	GATA binding protein 3			Intron
				Noncoding-Transcript-Variant
Gata3os	GATA binding protein 3 opposite strand			1978 bp upstream
Gm13256	predicted gene 13256			381 bp downstream
Gm75628	predicted gene, 75628			1522 bp downstream
Rr339	regulatory region 339			1807 bp proximal
Rr551592	regulatory region 551592			1984 bp distal
Rr551593	regulatory region 551593			160 bp distal
Rr551594	regulatory region 551594			509 bp proximal
Rr551595	regulatory region 551595			841 bp proximal
Rr551596	regulatory region 551596			1878 bp proximal
Tssr16062	transcription start site region 16062			497 bp upstream
Tssr16063	transcription start site region 16063			1203 bp upstream
Tssr22554	transcription start site region 22554			1791 bp upstream
Tssr22555	transcription start site region 22555			1400 bp upstream
Tssr22556	transcription start site region 22556			1363 bp upstream
Tssr22557	transcription start site region 22557			1234 bp upstream
Tssr22558	transcription start site region 22558			1056 bp upstream
Tssr22559	transcription start site region 22559			881 bp upstream
Tssr22560	transcription start site region 22560			801 bp upstream
Tssr22561	transcription start site region 22561			769 bp upstream
Tssr22562	transcription start site region 22562			643 bp upstream
Tssr22563	transcription start site region 22563			287 bp downstream
Tssr22564	transcription start site region 22564			313 bp downstream
Tssr22565	transcription start site region 22565			339 bp downstream
Tssr22566	transcription start site region 22566			1793 bp downstream
Tssr22567	transcription start site region 22567			1870 bp downstream